Logo Logo

Publications

If you utilize the Bioinformatics Core Facility in publications, abstracts, posters, and oral presentations, please insert the following acknowledgement as a result from the services provided to you:

“XXX(Individual initials) was(were) partially supported by grant U54MD007584 from the National Institute on Minority Health and Health Disparities as well as grants P20GM103466 and P30GM114737 from the National Institute of General Medical Sciences from the National Institutes of Health. The content is solely the responsibility of the authors and does not necessarily represent the official views of the NIH.”

List of Selected Publications

  • Dye CK, Corley MJ, Li D, Khadka VS, Mitchell BI, Sultana R, Lum-Jones A, Shikuma CM, Ndhlovu LC, Maunakea AK. Comparative DNA methylomic analyses reveal potential origins of novel epigenetic biomarkers of insulin resistance in monocytes from virally suppressed HIV infected adults. Clinical Epigenetics. 2019 Jul;11(1):95. doi:doi.org/10.1186/s13148-019-0694-1. PubMed PMID: 31253200; PubMed Central PMCID: PMC6599380.
  • Sasuclark AR, Khadka VS, Pitts MW. Cell-type specific analysis of selenium-related genes in brain. Antioxidants. 2019 May;8(5):120. doi:10.3390/antiox8050120. PubMed PMID: 31060314; PubMed Central PMCID: PMC6562762.
  • Deng Y, Zhu Y, Wang H, Khadka VS, Hu L, Ai J, Dou Y, Li Y, Dai S, Mason CE, Wang Y, Jia W, Zhang J, Huang G, Jiang B. A ratio-based method to identify true biomarkers by normalizing circulating ncRNA sequencing and quantitative PCR data. Analytical Chemistry. 2019 May 21;91(10):6746-6753. doi:10.1021/acs.analchem.9b00821. PubMed PMID: 31002238.
  • Fang R, Zhu Y, Khadka VS, Zhang F, Jiang B, Deng Y. The evaluation of serum biomarkers for non-small cell lung cancer (NSCLC) diagnosis. Frontiers in Physiology. 2018 Nov;9(1710):1-6. doi:10.3389/fphys.2018.01710. PubMed PMID: 30555348; PubMed Central PMCID: PMC6281717.
  • Sah N, Kuehu DL, Khadka VS, Deng Y, Peplowska K, Jha R, Mishra B. RNA sequencing-based analysis of the laying hen uterus revealed the novel genes and biological pathways involved in the eggshell biomineralization. Scientific Reports. 2018 Nov;2018(8):1-12. doi:10.1038/s41598-018-35203-y. PubMed PMID: 30443032; PubMed Central PMCID: PMC6237962.