Youping Deng, PhD
Professor, Director of Bioinformatics Core Facility
Office: BSB 222 B
dengy@hawaii.edu
(808) 692-1664
Degrees
PhD, Peking Union Medical College and Chinese Academy of Medical Sciences, Beijing, China
Research Focus
Bioinformatics, biomedical informatics, cancer, genomics, systems biology
Selected Publications
- Gao Z, Jijiwa M, Nasu M, Borgard H, Gong T, Xu J, Chen S, Fu Y, Chen Y, Hu X, Huang G, Deng Y. Comprehensive landscape of tRNA-derived fragments in lung cancer. Mol Ther Oncolytics. 2022 Jul 6;26:207-225. DOI: 10.1016/j.omto.2022.07.002. PMID: 35892120; PMCID: PMC9307607.
- Zitello E, Hernandez B, Deng Y. Viral Etiology of Solid Tumors and Immunotherapy. Gastroenterology. 2022 Feb;162(2):659-660. DOI: 10.1053/j.gastro.2021.09.048. Epub 2021 Sep 25. PMID: 34582894.
- Foox J, Nordlund J, Lalancette C, Gong T, Lacey M, Lent S, Langhorst BW, Ponnaluri VKC, Williams L, Padmanabhan KR, Cavalcante R, Lundmark A, Butler D, Mozsary C, Gurvitch J, Greally JM, Suzuki M, Menor M, Nasu M, Alonso A, Sheridan C, Scherer A, Bruinsma S, Golda G, Muszynska A, Łabaj PP, Campbell MA, Wos F, Raine A, Liljedahl U, Axelsson T, Wang C, Chen Z, Yang Z, Li J, Yang X, Wang H, Melnick A, Guo S, Blume A, Franke V, Ibanez de Caceres I, Rodriguez-Antolin C, Rosas R, Davis JW, Ishii J, Megherbi DB, Xiao W, Liao W, Xu J, Hong H, Ning B, Tong W, Akalin A, Wang Y, Deng Y, Mason CE. The SEQC2 epigenomics quality control (EpiQC) study. Genome Biol. 2021 Dec 6;22(1):332. DOI: 10.1186/s13059-021-02529-2.
- Hu L, Chen S, Fu Y, Gao Z, Long H, Ren HW, Zuo Y, Wang J, Li H, Xu QB, Yu WX, Liu J, Shao C, Hao JJ, Wang CZ, Ma Y, Wang Z, Yanagihara R, Deng Y. Risk Factors Associated With Clinical Outcomes in 323 Coronavirus Disease 2019 (COVID-19) Hospitalized Patients in Wuhan, China. Clin Infect Dis. 2020 Nov 19;71(16):2089-2098. DOI: 10.1093/cid/ciaa539. PMID: 32361738; PMCID: PMC7197620.
- Deng Y, Zhu Y, Wang H, Khadka VS, Hu L, Ai J, Dou Y, Li Y, Dai S, Mason CE, Wang Y, Jia W, Zhang J, Huang G, Jiang B. Ratio-Based Method To Identify True Biomarkers by Normalizing Circulating ncRNA Sequencing and Quantitative PCR Data. Anal Chem. 2019 May 21;91(10):6746-6753. DOI: 10.1021/acs.analchem.9b00821. Epub 2019 Apr 30. PMID: 31002238; PMCID: PMC6884007.
